Здавствуйте.
После установки пакетов с офсайта на любую операцию с токеном стало выдаватся сообщение 
pkcs15-tool -D --pin "12345678"
Using reader with a card: Rutoken S driver
[pkcs15-tool] pkcs15.c:794:sc_pkcs15_bind: returning with: Unsupported card
PKCS#15 initialization failed: Unsupported card
Со страрыми пакетами
 pkcs15-tool -D --pin "12345678"
Using reader with a card: Rutoken driver
[pkcs15-tool] card-rutoken.c:240:rutoken_check_sw: File (DO) not found
[pkcs15-tool] card-rutoken.c:477:rutoken_select_file: returning with: File not found
[pkcs15-tool] pkcs15-rutoken.c:171:sc_pkcs15_rutoken_init_func: File system mismatch
PKCS#15 Card [Rutoken card]:
        Version        : 20
        Serial number  : 26d27d48
        Manufacturer ID: 021400
        Flags          : 
PIN [User PIN]
        Com. Flags: 0x1
        ID        : 02
        Flags     : [0x03], case-sensitive, local
        Length    : min_len:1, max_len:16, stored_len:16
        Pad char  : 0xFF
        Reference : 2
        Type      : ascii-numeric
        Path      : 
        Tries left: 1
PIN [SO PIN]
        Com. Flags: 0x1
        ID        : 01
        Flags     : [0x83], case-sensitive, local, soPin
        Length    : min_len:1, max_len:16, stored_len:16
        Pad char  : 0xFF
        Reference : 1
        Type      : ascii-numeric
        Path      :
Tries left: 1